Macron told reporters that during Erdogan's visit to Paris on Friday he would "continue to discuss with Turkey the situation of imprisoned journalists who are prevented from practising their profession".
"I will do so with respect but with the concern to defend... our values and our interests," Macron said Wednesday.
But Erdogan's spokesman Ibrahim Kalin said Macron's comments were "based on a lack of information, unless it was a prejudiced evaluation or judgement".
"In Turkey, judicial issues come under the responsibility of the judiciary," Kalin said.
Kalin told reporters in Ankara on Thursday that "being a journalist... does not mean that a person is innocent and does not mean that they are unable to commit a crime".
The P24 press freedom group says there are 151 journalists behind bars in Turkey, most of whom were arrested under the state of emergency in place since July 2016.
Among those detained but later deported were two French citizens: the photojournalist Mathias Depardon and young French journalist Loup Bureau. They had been taken into custody last year on terror charges.
Kalin said Turkey was fighting against "three terrorist organisations", referring to the Islamic State (IS) extremist group, the outlawed Kurdistan Workers' Party (PKK) and the movement led by Muslim preacher Fethullah Gulen, who lives in Pennsylvania.
Ankara claims Gulen ordered the July 2016 failed overthrow of Erdogan and has arrested over 55,000 people in a controversial crackdown after the putsch bid.
Gulen strongly denies the accusations and insists his movement is a peaceful one.
The spokesman said that Erdogan would present documents and explain in a "detailed" manner how those being tried are a member of a terror group.
Erdogan's visit will be the first to France since the 2016 attempted putsch, and his third bilateral talks in a European Union member state after visits to Poland and Greece.
High on their agenda will be Ankara's relations with the EU as well as the conflicts in Syria and Iraq, and increasing bilateral trade.
The country ranks 155 out of 180 on the latest world press freedom index by Reporters Without Borders (RSF).
Eyewitness? Submit your stories now via social or:
Email: eyewitness@pulse.ng
