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Uber says its former engineer had a good reason to allegedly take Waymo's files — and it wasn't to give them to Uber (GOOG, GOOGL)

In a court filing, Uber gave an alternate explanation for why Anthony Levandowski allegedly downloaded 14,000 files related to self-driving car tech from Waymo.

No one knows why Anthony Levandowski allegedly downloaded 14,000 proprietary files before quitting his job at Google.

But Uber, the ride-hailing company that Levandowski eventually joined and which is now being sued by Google, has a theory: It was to protect his bonus.

Here's the story, according to Uber:

Google had set up a bonus program for Levandowski when it acquired his self-driving car "side project" many years ago, according to the filing. The program was intended to act like an stock grant at a standalone startup — the value of Levandowski's bonus was suppose to grow in tandem with the value of the self-driving car project within Google.

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But Google had shown a "grudging attitude" toward the bonus, and there was "significant tension and disagreements between Levandowski and senior managers at Google," according to the filing. As a result, Levandowski had reason to believe that Uber would undervalue the self-driving car effort, thus reducing his bonus or even possibly denying it entirely.

Uber has denied that it used Waymo's trade secrets. And after Levandowski refused to cooperate in the case, Uber fired him.

A Waymo spokesman dubbed Uber's bonus narrative "fictitious."

In recent court filings, Waymo has tried to make the case that Levandowski had no reason to worry about his bonus.

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In a court document Waymo filed on Monday, the company said that Levandowski was paid his bonus in December 2015 on time and was paid the last of his bonuses in April 2016 — also on time. In a separate document filed on Friday in response to Uber's assertions, Waymo said the company's explanation for Levandowski's actions "doesn't follow logically. And the idea that Levandowski was owed money that was overdue was "simply wrong," Waymo said.

"The notion that Levandowski would subject himself to criminal liability by stealing Waymo’s proprietary information and holding it 'ransom' for his performance bonus strains credibility," Waymo said in the filing.

The dueling court filings are part of a battle over whether Levandowski's invocation of the Fifth can be mentioned in a possibly trial and how it could be characterized. Waymo is urging the court to allow it to portray Levandowski's refusal to testify in a negative light, saying that it helps show Uber's culpability. Waymo argues that by taking the Fifth, Levandowski is protecting not only himself but Uber and by making it more difficult for Waymo to show that Uber had knowledge of the allegedly stolen files.

Uber is fighting that effort and disputing that notion. It's trying to show that Levandowski has other reasons not to testify that have nothing to do with it.

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The battle over Levandowski's refusal to testify is only the latest turn in the case. Earlier in July, Waymodropped some of its patent claimsin the lawsuit.

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